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Data from ref. 23 were downloaded from as an .h5ad file and converted to a Seurat object in R. Both the resulting Seurat object and the vaccine data were subset to include only myeloid cells and combined using Harmony. Similarly, the data from ref. 4 were integrated with the myeloid cells from the vaccine study using Harmony24. Lymphoid cells from ref. 4 were removed after integration. For both integrations, UMAP was performed on the Harmony-corrected embeddings.

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